Biology · IGCSE 0610 · §4.1

Biological Molecules

Big molecules built from small ones, and the colour tests that tell you which is which.

Biology · 0610 Topic 4 of 18

Elements and Building Blocks

Biological moleculesThe chemistry of living thingsall built from a few elements§4.1 · Elements and building blocksCarbon, hydrogen, oxygen, nitrogenLarge molecules made from small onesthree kinds of large molecule, and how to detect them§4.1 · Large moleculesCarbohydratesProteinsFats and oils§4.1 · Food testsIodine, Benedict’s, biuretEthanol emulsion, DCPIP§4.1 · DNA (EXT)Double helixBase pairs A-T and C-Gused togetherWork out what a sample containsmatch each test result to the molecule it detects
FIG 4.0 How the chapter connects: Living things are built from a small number of elements. Those elements make small units, and the small units are joined into large molecules. Food tests show which large molecules a sample contains.

Carbohydrates, fats and proteins are the main chemicals that make up living things. Each is made from only a few elements.

Definition
Macromolecule
A very large molecule made by joining many small molecules together.
Carbohydratessome are chains of glucoseProteinschains of amino acidsFats and oilsglycerol with fatty acids
FIG 4.6 Carbohydrates, proteins and fats are built from small units.

The elements

MoleculeElements it containsSmall units
CarbohydrateCarbon, hydrogen, oxygenSugars such as glucose
Fat or oilCarbon, hydrogen, oxygenFatty acids and glycerol
ProteinCarbon, hydrogen, oxygen, nitrogenAmino acids

Small units to large molecules

Large molecules are made by joining many small molecules together. Starch, glycogen and cellulose are made from many glucose units. Proteins are made from amino acids. Fats and oils are made from fatty acids and glycerol.

Glucosejoinedstarch, glycogen, celluloseAmino acidsjoinedproteinFatty acids and glyceroljoinedfat or oil
FIG 4.1 Small units joined into large molecules.

Worked example (identifying a molecule): Analysis shows that a large molecule contains carbon, hydrogen, oxygen and nitrogen. Which type of molecule is it? Step 1. Carbohydrates and fats contain only carbon, hydrogen and oxygen. Step 2. Nitrogen is the extra element. Step 3. Only proteins contain nitrogen, so the molecule is a protein. Answer: A protein.

Definition
Element
A substance made of only one kind of atom, such as carbon, hydrogen, oxygen or nitrogen.
Examiner note
Name the elements by name, not only by symbol, unless the question gives symbols. Proteins are the only one of the three that contain nitrogen.
Why this matters
Knowing the building blocks explains digestion: it breaks large molecules back into the small units, which can be absorbed.

Carbohydrates

Starch, glycogen and cellulose are all long chains of glucose. They have different jobs because the chains are arranged differently.

Definition
Glucose
A small sugar molecule; the unit from which starch, glycogen and cellulose are built.
Starchenergy store in plantsGlycogenenergy store in animalsCellulosestrong fibres in plant cell walls
FIG 4.2 Starch and glycogen are energy stores; cellulose forms strong fibres.
MoleculeMade fromWhere and what for
StarchMany glucose unitsEnergy store in plants
GlycogenMany glucose unitsEnergy store in animals, for example in the liver and muscles
CelluloseMany glucose unitsMakes up plant cell walls

Glucose is a small, soluble molecule. Joining many glucose units into starch or glycogen makes a large, insoluble molecule that can be stored in a cell and takes up little space.

Worked example (matching molecule to job): A molecule is found in a liver cell. It is a store of energy and is made only from glucose. Name it. Step 1. Made only from glucose, so starch, glycogen or cellulose. Step 2. It is in an animal cell and is an energy store, so it is not cellulose, which is a wall material. Step 3. Starch is stored in plants, so the molecule is glycogen. Answer: Glycogen.

Examiner note
Say all three are made from glucose, then say how they differ in function. Glycogen is stored in animals, not in plants.
Why this matters
Cellulose is the main material of plant cell walls. Humans cannot digest it, but it still passes through the gut as fibre.

Proteins and Fats

Proteins are chains of amino acids. Fats and oils are built from glycerol and fatty acids. Both are large molecules made from small units.

Definition
Amino acid
A small molecule that is the unit of proteins; many amino acids joined in a chain make a protein.
Protein: a chain of amino acidseach bead is one amino acid;the order differs between proteinsFat or oil: glycerol with three fatty acidsglycerol(one molecule)three fatty acids(the zigzag tails)
FIG 4.3 A protein is a chain of amino acids; a fat has one glycerol joined to three fatty acids.

Proteins

Many amino acids join in a long chain to form a protein. There are many different amino acids, and the order in which they are joined differs from one protein to another.

Fats and oils

Fats and oils are made from fatty acids and glycerol. One molecule of glycerol joins to three fatty acid molecules. Fats are solid at room temperature; oils are liquid.

Definition
Fatty acid
A small molecule that joins with glycerol to make fats and oils.

Worked example (naming the small units): Name the small units that make up (a) a protein and (b) a fat. Step 1. A protein is a chain of many amino acids. Step 2. A fat is made of glycerol and fatty acids. Step 3. Give both parts for the fat: one glycerol and three fatty acids. Answer: (a) amino acids; (b) glycerol and fatty acids.

Examiner note
A fat is made from three fatty acids and one glycerol. Write both parts; “fatty acids” alone is incomplete.
Why this matters
The order of amino acids differs between proteins, which is why there are so many different proteins in a living thing.

Food Tests 1: Iodine and Benedict’s

Each food test uses a reagent (or reagents) that gives a visible change when one kind of molecule is present. Learn the positive and negative results.

Starch: iodine solution

Add a few drops of iodine solution to the sample. If starch is present, the colour changes from yellow-brown to blue-black. If there is no starch, it stays yellow-brown.

Reducing sugars: Benedict’s solution

If the food is solid, crush it and mix it with water first. Add Benedict’s solution, which is blue, to the sample and heat it in a hot water bath. If a reducing sugar is present, the colour changes from blue through green, yellow and orange to brick-red. The more reducing sugar there is, the further the colour goes. If there is none, the solution stays blue.

Definition
Reducing sugar
A type of sugar, such as glucose, that gives a colour change with Benedict’s solution on heating.
bluegreenyelloworangebrick-redno reducing sugara lot of reducing sugarcolour after heating with Benedict’s solution
FIG 4.4 Benedict’s test: colours seen after heating, from none to a lot of reducing sugar.
TestPositive resultNegative result
Iodine (starch)Blue-blackStays yellow-brown
Benedict’s (reducing sugar)Green, yellow, orange or brick-redStays blue

Worked example (reading a result): A food sample is heated with Benedict’s solution and turns orange. Iodine solution added to a separate portion stays yellow-brown. What does it contain? Step 1. Orange with Benedict’s means a reducing sugar is present. Step 2. Iodine stays yellow-brown, so there is no starch. Step 3. Reducing sugar is present and starch is absent. Answer: Reducing sugar, no starch.

Examiner note
Quote both colours: the starting colour and the colour at the end. “It changes colour” earns nothing.
Examiner note
Sucrose (table sugar) is not a reducing sugar. It stays blue unless it is first broken down.
Why this matters
A food test is only useful if the negative result is known too: a blue Benedict’s result means no reducing sugar, not a failed test.

Food Tests 2: Biuret, Ethanol and DCPIP

Three more tests identify proteins, fats and oils, and vitamin C.

Proteins: biuret test

If the food is solid, crush it and mix it with water first. Add biuret solution, which is blue, to the sample. If protein is present, the colour changes from blue to purple (mauve). If there is no protein, it stays blue.

Fats and oils: ethanol emulsion test

Crush the sample and shake it with ethanol so that any fat or oil dissolves, then pour the mixture into water. If fat or oil is present, a cloudy white emulsion forms. If not, the liquid stays clear.

Vitamin C: DCPIP

DCPIP is a blue solution. Add the sample drop by drop to a small volume of DCPIP. If vitamin C is present, the blue colour disappears and the solution becomes colourless. The fewer drops needed to decolourise it, the more vitamin C the sample contains.

TestDetectsPositive resultNegative result
BiuretProteinBlue to purpleStays blue
Ethanol emulsionFat or oilCloudy white emulsionStays clear (colourless)
DCPIPVitamin CBlue goes colourlessStays blue

Worked example (comparing two juices): 10 drops of juice A and 4 drops of juice B each decolourise the same volume of DCPIP. Which contains more vitamin C? Step 1. Fewer drops of juice are needed to decolourise the DCPIP. Step 2. Juice B needed 4 drops and juice A needed 10 drops. Step 3. Less juice does the same job, so juice B is richer in vitamin C. Answer: Juice B.

Examiner note
Describe the ethanol emulsion test in order: dissolve in ethanol, then add water. The cloudy white emulsion appears only after the water is added.
Examiner note
For DCPIP, the positive result is the blue colour disappearing. Write “decolourised” or “goes colourless”.
Why this matters
Vitamin C is the substance tested for with DCPIP. A fruit juice that decolourises more DCPIP, using fewer drops, contains more vitamin C.

DNA

This page is Extended content: DNA is a large molecule made from small units, like the others in this chapter.

Definition
DNA
(Extended) The molecule that carries genetic information; two strands coiled together as a double helix.

ExtendedStructure of DNA

DNA is made of two strands coiled together to form a double helix. Each strand carries a row of bases of four types: A, C, G and T. The two strands are held together by hydrogen bonds between pairs of bases.

The pairing is fixed: A pairs with T, and C pairs with G. These are called complementary base pairs.

Definition
Base
(Extended) One of four chemicals, A, C, G and T, carried by the strands of DNA.
two strands coiledtogether: a double helixeach rung is a pair of basesjoined by bondsA pairs with TC pairs with G
FIG 4.5 The DNA double helix: two strands joined by pairs of bases.

ExtendedUsing the pairing rule

If you know the order of bases on one strand, you can write the other strand by swapping each base for its partner.

Worked example (the other strand): One strand of DNA has the bases A T T G C in order. Write the bases of the strand it pairs with. Step 1. Pair each base: A pairs with T, T pairs with A, T pairs with A, G pairs with C, C pairs with G. Step 2. Write the partners in the same order. Answer: T A A C G.

Examiner note
Write the pairs as A with T and C with G. A with G or A with C earns no mark.

Exam advice

Common mistakes

Giving only the final colour for Benedict’s
Say it starts blue and goes to green, yellow, orange or brick-red after heating.
Forgetting to heat for Benedict’s
A hot water bath is part of the method. Iodine, biuret and DCPIP need no heating.
Calling sucrose a reducing sugar
Table sugar gives no colour change with Benedict’s, so the solution stays blue.
Writing “clear” instead of “colourless” for DCPIP
The blue colour disappears. The solution is colourless, not blue and not cloudy.
Pairing DNA bases wrongly
A pairs with T and C pairs with G. No other pairing is correct.

Model answer

Describe how you would test a sample of food for reducing sugar.
[4 marks]
Mark 1
[k] Names the reagent.
Crush or dissolve the food in water, then add Benedict’s solution (accept: Benedict’s reagent).
Mark 2
[k] Gives the condition.
Heat in a hot water bath.
Mark 3
[k] Gives the positive result.
Colour changes from blue to green, yellow, orange or brick-red.
Mark 4
[app] Gives the conclusion.
Reducing sugar is present; if it stays blue, there is none.

Recall checklist

  • Name the elements in each of the three molecules.
  • State the small units of starch, protein and fat.
  • Give the role of starch, glycogen and cellulose.
  • Give reagent and colour change for starch and reducing sugar.
  • Give reagent and result for protein, fat and vitamin C.
  • Name the sugar that does not react with Benedict’s.
  • Describe DNA and its base pairs (Extended)
  • Write the partner strand of a DNA sequence (Extended)

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